Publications

Aaron Weimann, Adam M Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Karen Brown, Judy Ryan, Lúcia Santos, Louise Ellison, Emem Ukor, Arun P Pandurangan, Sina Krokowski, Tom L Blundell, Martin Welch, Beth Blane, Kim Judge, Rachel Bousfield, Nicholas Brown, Josephine M Bryant, Irena Kukavica-Ibrulj, Giordano Rampioni, Livia Leoni, Patrick T Harrison, Sharon J Peacock, Nicholas R Thomson, Jeff Gauthier, Jo L Fothergill, Roger C Levesque, Julian Parkhill, R Andres Floto (2024). Evolution and host-specific adaptation of Pseudomonas aeruginosa. Science.
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Maciej Wiatrak, Aaron Weimann, Adam Dinan, Maria Brbić, R Andres Floto (2024). Sequence-based modelling of bacterial genomes enables accurate antibiotic resistance prediction. bioRxiv.
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Christopher Ruis, Aaron Weimann, Gerry Tonkin-Hill, Arun Prasad Pandurangan, Marta Matuszewska, Gemma G R Murray, Roger C Lévesque, Tom L Blundell, R Andres Floto, Julian Parkhill (2023). Mutational spectra are associated with bacterial niche. Nat. Commun..
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Yue Yuan On, Wendy Figueroa, Catherine Fan, Pok-Man Ho, Éva Bernadett Bényei, Aaron Weimann, Christopher Ruis, Andres R Floto, Martin Welch (2023). Impact of transient acquired hypermutability on the inter- and intra-species competitiveness of Pseudomonas aeruginosa. ISME J..
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Lucas Boeck, Sophie Burbaud, Marcin Skwark, Will H Pearson, Jasper Sangen, Andreas W Wuest, Eleanor K P Marshall, Aaron Weimann, Isobel Everall, Josephine M Bryant, Sony Malhotra, Bridget P Bannerman, Katrin Kierdorf, Tom L Blundell, Marc S Dionne, Julian Parkhill, R Andres Floto (2022). Mycobacterium abscessus pathogenesis identified by phenogenomic analyses. Nat Microbiol.
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Charlotte Maserumule, Charlotte Passemar, Olivia S H Oh, Kriztina Hegyi, Karen Brown, Aaron Weimann, Adam Dinan, Sonia Davila, Catherine Klapholz, Josephine Bryant, Deepshikha Verma, Jacob Gadwa, Shivankari Krishnananthasivam, Kridakorn Vongtongsalee, Edward Kendall, Andres Trelles, Martin L Hibberd, Rafael Prados-Rosales, Kaliappan Andi, S Siva Kumar, Diane Ordway, Paul a MacAry, R Andres Floto (2022). Phagosomal RNA sensing through TLR8 controls susceptibility to tuberculosis. bioRxiv.
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Josephine M Bryant, Karen P Brown, Sophie Burbaud, Isobel Everall, Juan M Belardinelli, Daniela Rodriguez-Rincon, Dorothy M Grogono, Chelsea M Peterson, Deepshikha Verma, Ieuan E Evans, Christopher Ruis, Aaron Weimann, Divya Arora, Sony Malhotra, Bridget Bannerman, Charlotte Passemar, Kerra Templeton, Gordon MacGregor, Kasim Jiwa, Andrew J Fisher, Tom L Blundell, Diane J Ordway, Mary Jackson, Julian Parkhill, R Andres Floto (2021). Stepwise pathogenic evolution of textitMycobacterium abscessus. Science.
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Annapaula Correia, Aaron Weimann (2021). Protein antibiotics: mind your language. Nat. Rev. Microbiol..
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Gerry Tonkin-Hill, Neil MacAlasdair, Christopher Ruis, Aaron Weimann, Gal Horesh, John a Lees, Rebecca a Gladstone, Stephanie Lo, Christopher Beaudoin, R Andres Floto, Simon D W Frost, Jukka Corander, Stephen D Bentley, Julian Parkhill (2020). Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biol..
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Ariane Khaledi*, Aaron Weimann*, Monika Schniederjans, Ehsaneddin Asgari, Tzu-Hao Kuo, Antonio Oliver, Gabriel Cabot, Axel Kola, Petra Gastmeier, Michael Hogardt, Daniel Jonas, Mohammad Rk Mofrad, Andreas Bremges, Alice C McHardy, Susanne Häussler (2020). Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics. EMBO Mol. Med..
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